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SRX3219135: GSM2794825: shTAF4.3818_RN2; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 45.1M spots, 2.3G bases, 1.5Gb downloads

Submitted by: NCBI (GEO)
Study: A TFIID-SAGA perturbation that targets MYB and suppresses acute myeloid leukemia (RNA-seq)
show Abstracthide Abstract
Targeting of general coactivators, such as BRD4, is an emerging strategy to interfere with oncogenic transcription factors (TFs) in cancer. However, coactivator perturbations have the potential to influence the function of numerous TFs, thereby resulting in biological pleiotropy. Here we identify TAF12, an 18 kilodalton subunit of TFIID/SAGA coactivator complexes, as a selective requirement for acute myeloid leukemia (AML) progression. We trace this AML-specific dependency to a direct interaction between the TAF12/TAF4 histone-fold heterodimer and the transactivation domain of MYB, a TF with established roles in leukemogenesis. Ectopic expression of a histone-fold domain fragment of TAF4 can efficiently squelch TAF12 in cells, suppress MYB, and regress AML in mice. Our study reveals a strategy for potent MYB inhibition in AML and highlights how an oncogenic TF can be selectively neutralized by targeting a general coactivator complex. Overall design: For RNA-seq in cells transduced with control shRNAs/sgRNAs/empty vector, two technical repeats were performed. For RNA-seq in cells transduced with experimental shRNAs/sgRNAs/cDNA, two independent shRNAs/sgRNAs/tagged cDNAs were treated as repeats.
Sample: shTAF4.3818_RN2
SAMN07709320 • SRS2543822 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA was extracted using TRIzol following manufacture’s protocol. 2ug total RNA was used for constructing RNA-seq library RNA-seq libraries were constructed using the Illumina TruSeq sample prep kit v2 following manufacture’s protocol. Briefly, RNA was polyA selected and enzymatically fragmented. cDNA was synthesized using Super Script II master mix, followed by end repair, A-tailing and PCR amplification.
Experiment attributes:
GEO Accession: GSM2794825
Links:
Runs: 1 run, 45.1M spots, 2.3G bases, 1.5Gb
Run# of Spots# of BasesSizePublished
SRR608014545,144,1042.3G1.5Gb2018-01-08

ID:
4528147

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